Session s363b8fe1886

---files---
/home/byk/.local/share/opencode/worktree/51d1015fd1f616acf9a5ffaad9331ec6b304586b/clever-circuit/packages/gateway/test/project-path.test.ts

<path>/home/byk/.local/share/opencode/worktree/51d1015fd1f616acf9a5ffaad9331ec6b304586b/clever-circuit/packages/core/src/db.ts</path>
<type>file</type>
<content>
1585: 
1586: /**
1587:  * Look up a project by git_remote (preferred) or path. Returns the project ID
1588:  * or null if not found. Unlike `ensureProject()`, this is read-only — it never
1589:  * creates a project or registers path aliases.
1590:  */
1591: export function resolveProjectByRemoteOrPath(
1592:   gitRemote?: string,
1593:   path?: string,
1594: ): string | null {
1595:   if (gitRemote) {
1596:     const row = db()
1597:       .query("SELECT id FROM projects WHERE git_remote = ? LIMIT 1")
1598:       .get(gitRemote) as { id: string } | null;
1599:     if (row) return row.id;
1600:   }
1601:   if (path) {
1602:     return projectId(path) ?? null;
1603:   }
1604:   return null;
1605: }
1606: 
1607: /**
1608:  * Look up the path for a project by its internal ID. ...

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<path>/home/byk/.local/share/opencode/worktree/51d1015fd1f616acf9a5ffaad9331ec6b304586b/clever-circuit/packages/core/src/index.ts</path>
<type>file</type>
<content>
60: export { dataDir } from "./data-dir";
61: export { load, config, type LoreConfig } from "./config";
62: export {
63:   db,
64:   dbPath,
65:   ensureProject,
66:   getLastImportAt,
67:   setLastImportAt,
68:   isFirstRun,
69:   projectId,
70:   projectName,
71:   projectPath,
72:   resolveProjectByRemoteOrPath,
73:   mergeProjectInternal,
74:   UNATTRIBUTED_PROJECT_PREFIX,
75:   isUnattributedProjectPath,
76:   loadForceMinLayer,
77:   saveForceMinLayer,
78:   saveSessionCosts,
79:   loadSessionCosts,
80:   loadAllSessionCosts,
81:   type SessionCostSnapshot,
82:   addDailyCost,
83:   getDailyCostTotals,
84:   getDailyCostForDay,
85:   type DailyCostBucket,
86:   saveSessionTracking,
87:   loadSessionTracking,
88:   loadHeaderSessionIndex,
89:   loadParentChildMap,
90:   type SessionTrackingState,
91:   type ...

=== regenerate blob with cached 22.14.0 ===
Wrote single executable preparation blob to sea.blob
=== replicate fossilize: copy -> strip -> inject -> holepunch ===
injected into myapp22
--- run after inject (22.14.0) ---
hello from sea a
holepunch stats: {"totalEntries":4136,"removedEntries":2607,"keptEntries":1529,"bytesZeroed":23403552,"bytesKept":8335136}
--- run after holepunch (22.14.0) ---
hello from sea b

 * branch            master     -> FETCH_HEAD
Already on 'master'
Your branch is up to date with 'origin/master'.
 * [new tag]         2.26.9     -> 2.26.9
Already up to date.

/home/byk/.local/share/opencode/worktree/55fa901aca64a01fa4b5c2abce1c85c1c27475e7/stellar-falcon/.github/workflows/release.yml
/home/byk/.local/share/opencode/worktree/55fa901aca64a01fa4b5c2abce1c85c1c27475e7/stellar-falcon/.github/workflows/lint.yml
/home/byk/.local/share/opencode/worktree/55fa901aca64a01fa4b5c2abce1c85c1c27475e7/stellar-falcon/.github/workflows/docs-preview.yml
/home/byk/.local/share/opencode/worktree/55fa901aca64a01fa4b5c2abce1c85c1c27475e7/stellar-falcon/.github/workflows/changelog-preview.yml
/home/byk/.local/share/opencode/worktree/55fa901aca64a01fa4b5c2abce1c85c1c27475e7/stellar-falcon/.github/workflows/build.yml
/home/byk/.local/share/opencode/worktree/55fa901aca64a01fa4b5c2abce1c85c1c27475e7/stellar-falcon/.github/workflows/image.yml
/home/byk/.local/share/opencode/worktree/55fa901aca64a01fa4b5c2abce1c85c1c27475e7/stellar-falcon/.github/workflows/enforce-license-compliance.yml

https://github.com/getsentry/craft/actions/runs/27307294452
triggered

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big.js bytes: 246699
Wrote single executable preparation blob to big.blob
warning: Can't find string offset for section name '.note'
--- run big (22.14.0 linux) ---
big 10068.703606697254

* master Release · 27307294452
Triggered via workflow_dispatch less than a minute ago

JOBS
* Build / Node 24 (ID 80668407623)
* Build / Node 22 (ID 80668407696)

For more information about a job, try: gh run view --job=<job-id>
View this run on GitHub: https://github.com/getsentry/craft/actions/runs/27307294452

<path>/home/byk/.local/share/opencode/worktree/51d1015fd1f616acf9a5ffaad9331ec6b304586b/clever-circuit/packages/gateway/src/pipeline.ts</path>
<type>file</type>
<content>
14: import type { LoreMessageWithParts, LLMClient } from "@loreai/core";
15: import {
16:   load,
17:   config as loreConfig,
18:   ensureProject,
19:   projectId,
20:   mergeProjectInternal,
21:   temporal,
22:   ltm,
23:   distillation,
24:   curator,
25:   log,
26:   transform,
27:   setModelLimits,
28:   setLtmTokens,
29:   getLtmBudget,
30:   getPreferenceLtmBudget,
31:   setMaxLayer0Tokens,
32:   setForceMinLayer,
33:   computeLayer0Cap,
34:   setCachePricing,
35:   distillLimiter,
36:   recordCacheUsage,
37:   calibrate,
38:   getLastTransformedCount,
39:   getLastTransformEstimate,
40:   onIdleResume,
41:   consumeCameOutOfIdle,
42:   needsUrgentDistillation,
43:   getConsecutiveBusts,
44:   effectiveMetaThreshold as computeMetaThreshold,
45:   formatKnowledge,
46:   shouldImportLoreFile,
47:   ...

E2E UI Tests	pass	3m6s	https://github.com/getsentry/spotlight/actions/runs/27306865683/job/80667518311	
semgrep-cloud-platform/scan	pending	0	https://semgrep.dev/orgs/sentry/projects/3110759/scans	

Edit applied successfully.

[
  {
    "content": "A1: Flip curator crossProject default to false + update prompt guidance",
    "status": "completed",
    "priority": "high"
  },
  {
    "content": "A2: Relevance-gate foreign cross-project entries in forSession (helper + fast path + no-context fallback)",
    "status": "completed",
    "priority": "high"
  },
  {
    "content": "A3: Add DB migration to demote wrongly-marked cross_project rows + bump schema version test",
    "status": "completed",
    "priority": "high"
  },
  {
    "content": "B: Add mode:subagent to lore-* workers + update opencode test",
    "status": "completed",
    "priority": "high"
  },
  {
    "content": "C1: Tighten inferProjectPath patterns",
    "status": "completed",
    "priority": "medium"
  },
  {
    "content": "C2: Guard self-heal merge against weak-inference cross-real-path merges",
    "status": "completed",
    "priority": "medium"
  },
  {
    "content": "Add tests (ltm gating, migration, curator default, config inference, ...

=== sea code cache rejected ===
BYK/fossilize 28 open SEA code cache rejected at runtime despite same Node binary generating and consuming it
=== useCodeCache rejected ===
=== Code cache data rejected macos ===
=== sea code cache arm64 ===

  ✓ Package Docs
  ✓ Upload Docs Artifact
  ✓ Post Run pnpm/action-setup@fc06bc1257f339d1d5d8b3a19a8cae5388b55320
  ✓ Post Run actions/setup-node@v6
  ✓ Post Run actions/checkout@v6
  ✓ Complete job
✓ Release a new version in 13s (ID 80668598514)
  ✓ Set up job
  ✓ Get auth token
  ✓ Run actions/checkout@v6
  ✓ Prepare release (dogfooding)
  - Prepare release
  ✓ Post Run actions/checkout@v6
  ✓ Post Get auth token
  ✓ Complete job

ANNOTATIONS
- Created publish request: https://github.com/getsentry/publish/issues/8525
Release a new version: .github#346

===EXIT 0===

<task id="ses_14c98214effexBgKDWHSCypfuo" state="completed">
<task_result>


I now have a comprehensive understanding of all the changes. Let me compile the full review.

---

# PR #682 Review: `fix-entity-knowledge-recovery`

## BLOCKING Issues

### B1. `pruneEntityDedupFeedback` can delete `self_merge` audit rows despite them being excluded from counting

**File:** `packages/core/src/entities.ts:1922-1945`

`getEntityDedupFeedbackCount` now excludes `source != 'self_merge'` rows from the count, but the `DELETE` subquery in `pruneEntityDedupFeedback` does NOT filter `source != 'self_merge'`. This means the pruning excess is computed on non-self_merge rows only, but the `ORDER BY created_at ASC LIMIT ?` delete targets ALL entity feedback rows including self_merge ones. Because self_merge rows have `similarity=1.0` and are always `accepted=true`, they'll often be among the oldest rows. ...

[
  {
    "content": "B1: Fix pruneEntityDedupFeedback to exclude self_merge rows from deletion",
    "status": "in_progress",
    "priority": "high"
  },
  {
    "content": "B2: Add hosted-mode/auth comment or guard on /api/v1/entities/rebuild",
    "status": "pending",
    "priority": "high"
  },
  {
    "content": "I1: Fix personCount to be explicit about global scope",
    "status": "pending",
    "priority": "medium"
  },
  {
    "content": "I2+I3: Add relation test + error-path tests to entity-rebuild.test.ts",
    "status": "pending",
    "priority": "medium"
  },
  {
    "content": "M6: Add truncation marker for oversized observations",
    "status": "pending",
    "priority": "low"
  },
  {
    "content": "Re-run typecheck + lint + tests, push update",
    "status": "pending",
    "priority": "high"
  }
]

<path>/home/byk/.local/share/opencode/worktree/51d1015fd1f616acf9a5ffaad9331ec6b304586b/clever-circuit/packages/core/test/knowledge-transfers.test.ts</path>
<type>file</type>
<content>
1: import { describe, test, expect, beforeEach } from "vitest";
2: import { uuidv7 } from "uuidv7";
3: import { db, ensureProject } from "../src/db";
4: import * as ltm from "../src/ltm";
5: import * as data from "../src/data";
6: import { runRecall } from "../src/recall";
7: 
8: // Origin project of the promoted entry, and a DIFFERENT project where it is
9: // recalled/surfaced (the "foreign" project).
10: const ORIGIN = "/test/transfers/origin";
11: const FOREIGN = "/test/transfers/foreign";
12: const FOREIGN_SESSION = "transfers-session-1";
13: 
14: function cleanup() {
15:   // Remove all knowledge + transfers belonging to the test projects.
16:   db()
17:     .query(
18:       "DELETE FROM knowledge_transfers WHERE knowledge_id IN (SELECT id FROM knowledge WHERE project_id IN (SELECT id FROM ...

{"completedAt":"2026-06-10T21:25:10Z","conclusion":"success","name":"Prepare release (dogfooding)","number":4,"startedAt":"2026-06-10T21:25:03Z","status":"completed"}
---BRANCHES---
acdb88019720182caf57293360d7cdc8db9e75ac	refs/heads/release/2.26.10

<path>/home/byk/Code/opencode-lore/packages/core/src/entities.ts</path>
<type>file</type>
<content>
1920: }
1921: 
1922: /** Prune old entity feedback rows, keeping the most recent rows. */
1923: export function pruneEntityDedupFeedback(projectId: string | null): void {
1924:   const count = getEntityDedupFeedbackCount(projectId);
1925:   if (count <= MAX_ENTITY_FEEDBACK_ROWS_PER_PROJECT) return;
1926:   const excess = count - MAX_ENTITY_FEEDBACK_ROWS_PER_PROJECT;
1927:   if (projectId !== null) {
1928:     db()
1929:       .query(
1930:         `DELETE FROM dedup_feedback WHERE id IN (
1931:            SELECT id FROM dedup_feedback WHERE kind = 'entity' AND project_id = ?
1932:            ORDER BY created_at ASC LIMIT ?
1933:          )`,
1934:       )
1935:       .run(projectId, excess);
1936:   } else {
1937:     db()
1938:       .query(
1939:         `DELETE FROM dedup_feedback WHERE id IN (
1940:            SELECT id FROM dedup_feedback WHERE kind = 'entity' AND project_id IS ...

<path>/home/byk/.local/share/opencode/worktree/51d1015fd1f616acf9a5ffaad9331ec6b304586b/clever-circuit/packages/core/test/knowledge-transfers.test.ts</path>
<type>file</type>
<content>
137: describe("forSession transfer recording", () => {
138:   beforeEach(cleanup);
139: 
140:   test("records a promoted foreign entry recalled in another project", async () => {
141:     createPromoted(
142:       "Caching layer decision",
143:       "Use an LRU cache for the resolver hot path",
144:     );
145:     seedForeignContext("How should I add a cache to the resolver hot path?");
146: 
147:     const fpid = ensureProject(FOREIGN);
148:     const result = await ltm.forSession(FOREIGN, FOREIGN_SESSION, 10_000);
149:     // Sanity: the promoted entry surfaced in the foreign project.
150:     const surfaced = result.find((e) => e.title === "Caching layer decision");
151:     expect(surfaced).toBeDefined();
152:     if (!surfaced) throw new Error("expected surfaced entry");
153:     ...

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{"body":"Requested by: @BYK\n\nMerge target: (default)\n\nQuick links:\n- [View changes](https://github.com/getsentry/craft/compare/2.26.9...release/2.26.10)\n- [View check runs](https://github.com/getsentry/craft/commit/acdb88019720182caf57293360d7cdc8db9e75ac/checks/)\n\nAssign the **accepted** label to this issue to approve the release.\n\n### Targets\n\n - [ ] npm\n - [ ] gcs\n - [ ] registry\n - [ ] docker[release]\n - [ ] docker[latest]\n - [ ] github\n - [ ] gh-pages\n\nChecked targets will be skipped (either already published or user-requested skip). Uncheck to retry a target.\n\n---\n\n<details open>\n<summary>📋 Changelog</summary>\n\n### Bug Fixes 🐛\n\n- Bump shell-quote 1.7.3 → ^1.8.4 (GHSA-w7jw-789q-3m8p) by @BYK in [#833](https://github.com/getsentry/craft/pull/833)\n\n</details>","state":"OPEN","title":"publish: getsentry/craft@2.26.10"}

<path>/home/byk/Code/fossilize/src/node-util.ts</path>
<type>file</type>
<content>
1: import { createWriteStream, openSync } from "node:fs";
2: import * as fs from "node:fs/promises";
3: import { tmpdir } from "node:os";
4: import path from "node:path";
5: import { Readable } from "node:stream";
6: import { finished } from "node:stream/promises";
7: import { unsign } from "macho-unsign";
8: import { signatureSet } from "portable-executable-signature";
9: import { untar, unzip } from "./archive-util";
10: 
11: type ErrorWithCode = Error & { code: string };
12: type NodeJSVersionInfo = {
13:   version: string;
14:   date: string;
15:   files: string[];
16:   npm: string;
17:   v8: string;
18:   uv: string;
19:   zlib: string;
20:   openssl: string;
21:   modules: string;
22:   lts: boolean;
23:   security: boolean;
24: };
25: 
26: function getNodeBinaryCacheName(
27:   version: string,
28:   platform: string
29: ): { name: string; ext: string } {
30:   const ext = ...

https://github.com/getsentry/publish/issues/8525

(no output)

347:    .query("DELETE FROM entity_relations WHERE entity_a = ? OR entity_b = ?")
1002:      `UPDATE OR IGNORE entity_relations SET entity_a = ? WHERE entity_a = ?`,
1005:      `UPDATE OR IGNORE entity_relations SET entity_b = ? WHERE entity_b = ?`,
1009:      "DELETE FROM entity_relations WHERE entity_a = ? OR entity_b = ?",
1048:export function addRelation(
1066:        `INSERT INTO entity_relations (id, entity_a, entity_b, relation, metadata, source, created_at, updated_at)
1092:export function removeRelation(id: string): void {
1093:  db().query("DELETE FROM entity_relations WHERE id = ?").run(id);
1100:export function relationsFor(entityId: string): EntityRelationResolved[] {
1107:       FROM entity_relations r
1127:export function getRelation(
1135:        `SELECT * FROM entity_relations
1151:      `SELECT * FROM entity_relations
1162:export function formatRelationsForPrompt(entityId: string): string {

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[
  {
    "content": "B1: Fix pruneEntityDedupFeedback to exclude self_merge rows from deletion",
    "status": "completed",
    "priority": "high"
  },
  {
    "content": "B2: Add hosted-mode guard on /api/v1/entities/rebuild",
    "status": "completed",
    "priority": "high"
  },
  {
    "content": "I1: Fix personCount to be explicit about global scope",
    "status": "completed",
    "priority": "medium"
  },
  {
    "content": "I2+I3: Add relation test + error-path tests to entity-rebuild.test.ts",
    "status": "completed",
    "priority": "medium"
  },
  {
    "content": "M6: Add truncation marker for oversized observations",
    "status": "completed",
    "priority": "low"
  },
  {
    "content": "Re-run typecheck + lint + tests, push update",
    "status": "in_progress",
    "priority": "high"
  }
]

produced cache bytes: 760 flagHashSensitive baseline
--- consume default flags ---
cachedDataRejected = false
--- consume with --no-lazy ---
cachedDataRejected = true
--- consume with --jitless ---
Warning: disabling flag --expose_wasm due to conflicting flags
cachedDataRejected = true
--- consume with --no-turbofan ---
cachedDataRejected = true
--- consume with --interpreted-frames-native-stack ---
cachedDataRejected = true
--- consume with --no-flush-bytecode ---
cachedDataRejected = true
--- consume with --stress-flush-code ---
cachedDataRejected = true

Wrote file successfully.

packages/core typecheck$ tsc --noEmit
packages/core typecheck: Done
packages/gateway typecheck$ tsc --noEmit
packages/gateway typecheck: Done
packages/opencode typecheck$ tsc --noEmit
packages/pi typecheck$ tsc --noEmit
packages/opencode typecheck: Done
packages/pi typecheck: Done
=====LINT=====
  × Some errors were emitted while running checks.
  

 ELIFECYCLE  Command failed with exit code 1.

<path>/home/byk/.local/share/opencode/worktree/51d1015fd1f616acf9a5ffaad9331ec6b304586b/clever-circuit/packages/core/src/ltm.ts</path>
<type>file</type>
<content>
67: export function create(input: {
68:   projectPath?: string;
69:   category: string;
70:   title: string;
71:   content: string;
72:   session?: string;
73:   scope: "project" | "global";
74:   crossProject?: boolean;
75:   /** Explicit ID to use — for cross-machine import via agents-file. Defaults to a new UUIDv7. */
76:   id?: string;
77:   /** Initial confidence (0.0–1.0). Default 1.0. Controls injection priority for preferences. */
78:   confidence?: number;
79:   /** User ID who created this entry. Null for system-created entries. */
80:   createdBy?: string;
81:   /** Sensitivity classification — guides auto-promotion decisions. Default 'normal'. */
82:   sensitivity?: Sensitivity;
83:   /** Worker model providerID that produced this entry (curator / pattern-extract). */
84:   workerProviderID?: string;
85:   /** ...

106:  CREATE TABLE IF NOT EXISTS knowledge (
---
1128:export function get(id: string): KnowledgeEntry | null {

=== semgrep ===
semgrep-cloud-platform/scan	pass	8m54s	https://semgrep.dev/orgs/sentry/projects/3110759/scans/179120423	
=== merge state ===
{"mergeStateStatus":"DIRTY","mergeable":"CONFLICTING","state":"OPEN"}

<path>/home/byk/Code/fossilize/src/impl.ts</path>
<type>file</type>
<content>
275:     );
276:     console.log("Created executable", fossilizedBinary);
277:     fs.chmod(fossilizedBinary, 0o755);
278: 
279:     // Hole-punch unused ICU data before signing so the signature covers the
280:     // final bytes. Must run after SEA injection (ICU blob lives in the Node
281:     // binary's .rodata, unaffected by postject) and before sign + notarize.
282:     if (flags.holePunch) {
283:       const { processBinary } = await import("binpunch");
284:       const stats = processBinary(fossilizedBinary);
285:       if (stats && stats.removedEntries > 0) {
286:         console.log(
287:           `Hole-punched ${stats.removedEntries}/${stats.totalEntries} ICU entries in ${fossilizedBinary}`
288:         );
289:       }
290:     }
291: 
292:     if (!flags.sign) {
293:       if (platform.startsWith("darwin")) {
294:         // Ad-hoc sign with entitlements — minimum required for Apple Silicon
295: ...

 * branch            main       -> FETCH_HEAD
   dfd2049..fcbfdad  main       -> origin/main
=== new commits on origin/main since PR base (dfd2049) ===
fcbfdad security(deps): resolve 5 open dependabot alerts (shell-quote, hono) (#1321)

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<path>/home/byk/.local/share/opencode/worktree/51d1015fd1f616acf9a5ffaad9331ec6b304586b/clever-circuit/packages/core/src/db.ts</path>
<type>file</type>
<content>
106:   CREATE TABLE IF NOT EXISTS knowledge (
107:     id TEXT PRIMARY KEY,
108:     project_id TEXT,
109:     category TEXT NOT NULL,
110:     title TEXT NOT NULL,
111:     content TEXT NOT NULL,
112:     source_session TEXT,
113:     cross_project INTEGER DEFAULT 0,
114:     confidence REAL DEFAULT 1.0,
115:     created_at INTEGER NOT NULL,
116:     updated_at INTEGER NOT NULL,
117:     metadata TEXT
118:   );
119: 
120:   CREATE VIRTUAL TABLE IF NOT EXISTS knowledge_fts USING fts5(
121:     title,
122:     content,
123:     category,
124:     content=knowledge,
125:     content_rowid=rowid,
126:     tokenize='unicode61 remove_diacritics 0'
127:   );
128: 
129:   CREATE TRIGGER IF NOT EXISTS knowledge_fts_insert AFTER INSERT ON knowledge BEGIN
130:     INSERT INTO knowledge_fts(rowid, title, content, category)
131:     ...

<path>/home/byk/Code/opencode-lore/packages/core/test/entity-rebuild.test.ts</path>
<type>file</type>
<content>
165:     expect(result.relationsCreated).toBe(1);
166: 
167:     // Verify the relation was actually stored.
168:     const carol = entities.listAll().find((e) => e.canonical_name === "Carol");
169:     expect(carol).toBeDefined();
170:     const relations = entities.relationsFor(carol!.id);
171:     expect(relations.length).toBe(1);
172:     expect(relations[0].relation).toBe("colleague");
173:   });
174: 

(Showing lines 165-174 of 222. Use offset=175 to continue.)
</content>

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> lore-monorepo@ lint /home/byk/Code/opencode-lore
> biome check .

Checked 271 files in 2s. No fixes applied.

=== files changed by fcbfdad ===
commit fcbfdadc338b2bf14445b6730384e1a540db6157
Author: Burak Yigit Kaya <byk@sentry.io>
Date:   Wed Jun 10 22:20:25 2026 +0100

    security(deps): resolve 5 open dependabot alerts (shell-quote, hono) (#1321)
    
    ## Summary
    
    Resolves all **5 open Dependabot alerts** (1 critical, 4 medium). No
    security advisories were open.
    
    | Package | Severity | Alert(s) | Fix |
    |---------|----------|----------|-----|
    | `shell-quote` | Critical | #278 | pnpm override `>=1.8.4` + bump
    `launch-editor` to `^2.14.1` |
    | `hono` | Medium | #274, #275, #276, #277 | bump constraint to
    `^4.12.21` (resolves to `4.12.25`) |
    
    ## Details
    
    ### shell-quote (GHSA-w7jw-789q-3m8p / CVE-2026-9277)
    `quote()` does not escape newlines in object `.op` values, enabling
    shell command injection. It is a transitive dependency pulled in by:
    - `launch-editor` (prod) — bumped to `^2.14.1`, which already depends on
    ...

=== verify spotlight pkg has ^7.17.0 (auto-merged) ===
121:    "react-router-dom": "^7.17.0",
=== verify no conflict markers remain in package.json ===
package.json:0
pnpm-lock.yaml:0
Updated 1 path from the index

Edit applied successfully.

│   └── ✕ unmet peer vite@~6.4.2: found 7.3.3
├─┬ vite-plugin-inspect 0.7.42
│ └── ✕ unmet peer vite@"^3.1.0 || ^4.0.0 || ^5.0.0-0": found 7.3.3
├─┬ @astrojs/react 5.0.5
│ └─┬ @vitejs/plugin-react 5.2.0
│   └── ✕ unmet peer vite@~6.4.2: found 7.3.3
└─┬ @tailwindcss/vite 4.1.11
  └── ✕ unmet peer vite@~6.4.2: found 7.3.3

Done in 14.9s using pnpm v9.15.9

[detached HEAD 56582d2] fix(ui): make v7 router upgrade intentional and fix all splat path stacking
 9 files changed, 68 insertions(+), 14 deletions(-)
 create mode 100644 packages/spotlight/src/ui/telemetry/components/TelemetryTabs.test.tsx
Rebasing (3/3)

                                                                                
Successfully rebased and updated refs/heads/update-pr-1320.

=== log ===
dc99086 refactor(ui): address review — TELEMETRY_BASE_URL const, type-safe span path, stronger test
56582d2 fix(ui): make v7 router upgrade intentional and fix all splat path stacking
86357ea Use absolute path to avoid path stacking
fcbfdad security(deps): resolve 5 open dependabot alerts (shell-quote, hono) (#1321)
=== diff stat vs origin/main ===
 package.json                                       |  2 --
 packages/spotlight/package.json                    |  2 +-
 .../ui/telemetry/components/TelemetrySidebar.tsx   |  9 ++---
 .../ui/telemetry/components/TelemetryTabs.test.tsx | 42 ++++++++++++++++++++++
 .../src/ui/telemetry/components/TelemetryTabs.tsx  | 11 ++++--
 .../telemetry/components/events/EventDetails.tsx   |  3 +-
 .../src/ui/telemetry/components/insights/index.tsx |  3 +-
 .../components/traces/TraceDetails/index.tsx       |  9 +++--
 .../components/traces/spans/SpanDetails.tsx        | 20 ++++++++---
 packages/spotlight/src/ui/telemetry/constants.ts   |  3 ...

Reset the working copy parent to the new Git HEAD.
Done importing changes from the underlying Git repo.
Working copy changes:
M packages/core/src/entities.ts
M packages/core/src/entity-rebuild.ts
Bookmark fix-entity-knowledge-recovery@origin already matches fix-entity-knowledge-recovery
Nothing changed.

zkxspslurwtk 75dcb80ebb48  
mrooymzlysmk 59d8e8b33c4b fix-entity-knowledge-recovery fix(entities,ui): restore knowledge/entity views + harden self-merge + re-derivation

> lore-monorepo@ typecheck /home/byk/.local/share/opencode/worktree/51d1015fd1f616acf9a5ffaad9331ec6b304586b/clever-circuit
> pnpm -r run typecheck

Scope: 5 of 6 workspace projects
packages/core typecheck$ tsc --noEmit
packages/core typecheck: Done
packages/gateway typecheck$ tsc --noEmit
packages/gateway typecheck: Done
packages/opencode typecheck$ tsc --noEmit
packages/pi typecheck$ tsc --noEmit
packages/opencode typecheck: Done
packages/pi typecheck: Done

M packages/core/src/entities.ts
M packages/core/src/entity-rebuild.ts
M packages/core/test/entity-rebuild.test.ts
M packages/gateway/src/api.ts
---parent---
M .lore.md
M package.json
M packages/core/src/distillation.ts
M packages/core/src/entities.ts
A packages/core/src/entity-rebuild.ts
M packages/core/src/index.ts
M packages/core/src/prompt.ts
M packages/core/test/entities.test.ts
A packages/core/test/entity-rebuild.test.ts
M packages/gateway/src/api.ts
M packages/gateway/src/cli/data.ts
M packages/gateway/src/ui.ts

Working copy  (@) now at: uourvklo fb429ff3 (empty) (no description set)
Parent commit (@-)      : mrooymzl cfd4fc58 fix-entity-knowledge-recovery* | fix(entities,ui): restore knowledge/entity views + harden self-merge + re-derivation

Changes to push to origin:
  bookmark: fix-entity-knowledge-recovery [move sideways from 59d8e8b33c4b to cfd4fc58e816]

 RUN  v4.1.8 /home/byk/.local/share/opencode/worktree/51d1015fd1f616acf9a5ffaad9331ec6b304586b/clever-circuit


 Test Files  5 passed (5)
      Tests  193 passed (193)
   Start at  21:31:51
   Duration  8.61s (transform 5.25s, setup 1.49s, import 10.16s, tests 8.74s, environment 3ms)

=== tests ===
 Test Files  11 passed (11)
      Tests  188 passed (188)
   Start at  21:31:30
   Duration  10.69s (transform 2.33s, setup 0ms, import 8.71s, tests 4.83s, environment 11.21s)

=== typecheck error count (baseline 105) ===
105

{"commits":1,"mergeable":"MERGEABLE","state":"OPEN"}

<path>/home/byk/Code/fossilize/.github/workflows/build.yml</path>
<type>file</type>
<content>
1: name: Build & Test
2: 
3: on:
4:   push:
5:     branches: [main, 'release/**']
6:   pull_request:
7: 
8: concurrency:
9:   group: ${{ github.ref_name || github.sha }}
10:   cancel-in-progress: true
11: 
12: defaults:
13:   run:
14:     shell: bash
15: 
16: jobs:
17:   build:
18:     name: Build
19:     runs-on: ubuntu-latest
20:     steps:
21:       - name: Checkout
22:         uses: actions/checkout@v6
23:         with:
24:           fetch-depth: 0
25: 
26:       - name: Set up Node
27:         uses: actions/setup-node@v6
28:         with:
29:           node-version-file: package.json
30:           cache: npm
31: 
32:       - name: Setup NPM dependencies
33:         run: npm install
34: 
35:       - name: Build
36:         run: npm run build
37: 
38:       - name: Store dist
39:         uses: actions/upload-artifact@v7
40:         with:
41:           name: dist
42:           ...

> lore-monorepo@ pretest /home/byk/.local/share/opencode/worktree/51d1015fd1f616acf9a5ffaad9331ec6b304586b/clever-circuit
> pnpm --filter @loreai/gateway run bundle


> @loreai/gateway@0.26.0 bundle /home/byk/.local/share/opencode/worktree/51d1015fd1f616acf9a5ffaad9331ec6b304586b/clever-circuit/packages/gateway
> tsx script/bundle.ts


  dist/index.cjs      2.1mb ⚠️
  dist/index.cjs.map  8.8mb

⚡ Done in 1217ms

  dist/index.bun.js  1.3mb ⚠️

⚡ Done in 404ms

  dist/embedding-worker.cjs  490.3kb

⚡ Done in 257ms

  dist/embedding-worker.js  489.6kb

⚡ Done in 203ms
✓ Debug ID injected: e1d837c0-f082-456e-901a-b237b1f29745
  No SENTRY_AUTH_TOKEN — skipping sourcemap upload

✓ @loreai/gateway npm bundle complete (v0.26.0)
  dist/index.cjs            — CJS bundle (Node.js, node:sqlite)
  dist/index.bun.js         — ESM bundle (Bun, bun:sqlite)
  dist/embedding-worker.cjs — embedding worker CJS (Node.js)
  dist/embedding-worker.js  — embedding worker ESM (Bun)
  dist/bin.cjs              ...

<path>/home/byk/Code/fossilize/src/app.ts</path>
<type>file</type>
<content>
1: import { buildApplication, buildCommand } from "@stricli/core";
2: import { envToBool } from "./env-to-bool";
3: import { description, name, version } from "../package.json";
4: 
5: const command = buildCommand({
6:   loader: async () => import("./impl"),
7:   parameters: {
8:     positional: {
9:       kind: "tuple",
10:       parameters: [
11:         {
12:           placeholder: "entrypoint",
13:           brief: "Path to the file or project to fossilize",
14:           parse: String,
15:           default: ".",
16:         },
17:       ],
18:     },
19:     flags: {
20:       nodeVersion: {
21:         kind: "parsed",
22:         parse: String,
23:         brief: "Node.js version to fossilize with",
24:         default: process.env["FOSSILIZE_NODE_VERSION"] ?? ...

<path>/home/byk/Code/fossilize/src/impl.ts</path>
<type>file</type>
<content>
1: import { execFile } from "node:child_process";
2: import { promises as fs } from "node:fs";
3: import path from "node:path";
4: import { fileURLToPath } from "node:url";
5: import { promisify } from "node:util";
6: import * as esbuild from "esbuild";
7: import { inject } from "postject";
8: import type { LocalContext } from "./context";
9: import { getNodeBinary, resolveNodeVersion } from "./node-util";
10: import pLimit from "p-limit";
11: 
12: export interface FossilizeOptions {
13:   readonly nodeVersion: string;
14:   readonly platforms?: string[];
15:   readonly assets?: string[];
16:   readonly assetManifest?: string;
17:   readonly outDir: string;
18:   readonly outputName?: string;
19:   readonly cacheDir: string;
20:   readonly noCache?: boolean;
21:   readonly noBundle: boolean;
22:   readonly sign: boolean;
23:   readonly holePunch: boolean;
24:   readonly concurrencyLimit: number;
25: }
26: ...

> lore-monorepo@ lint /home/byk/.local/share/opencode/worktree/51d1015fd1f616acf9a5ffaad9331ec6b304586b/clever-circuit
> biome check .

Checked 270 files in 1627ms. No fixes applied.

 RUN  v4.1.8 /home/byk/.local/share/opencode/worktree/51d1015fd1f616acf9a5ffaad9331ec6b304586b/clever-circuit


 Test Files  3 passed (3)
      Tests  95 passed (95)
   Start at  21:33:52
   Duration  2.67s (transform 2.02s, setup 534ms, import 3.02s, tests 1.06s, environment 0ms)

=== docs check ===

> lore-monorepo@ check:docs /home/byk/.local/share/opencode/worktree/51d1015fd1f616acf9a5ffaad9331ec6b304586b/clever-circuit
> tsx scripts/generate-config-docs.ts --check && tsx scripts/generate-env-docs.ts --check

[generate-config-docs] --check: /home/byk/.local/share/opencode/worktree/51d1015fd1f616acf9a5ffaad9331ec6b304586b/clever-circuit/packages/website/src/content/docs/docs/configuration.md is up to date.
[generate-env-docs] --check: /home/byk/.local/share/opencode/worktree/51d1015fd1f616acf9a5ffaad9331ec6b304586b/clever-circuit/packages/website/src/content/docs/docs/environment.md is up to date.

 M .lore.md
 M packages/core/src/curator.ts
 M packages/core/src/db.ts
 M packages/core/src/index.ts
 M packages/core/src/ltm.ts
 M packages/core/src/prompt.ts
 M packages/core/test/db.test.ts
 M packages/gateway/src/config.ts
 M packages/gateway/src/pipeline.ts
 M packages/gateway/test/project-path.test.ts
 M packages/opencode/src/index.ts
 M packages/opencode/test/index.test.ts
?? packages/core/test/cross-project-gating.test.ts
=== diff stat ===
 .lore.md                                   |  84 +++++---------------
 packages/core/src/curator.ts               |   6 +-
 packages/core/src/db.ts                    |  27 +++++++
 packages/core/src/index.ts                 |   1 +
 packages/core/src/ltm.ts                   |  57 +++++++++++++-
 packages/core/src/prompt.ts                |   7 +-
 packages/core/test/db.test.ts              |   2 +-
 packages/gateway/src/config.ts             |  45 +++++++++--
 packages/gateway/src/pipeline.ts           |  29 +++++++
 ...

[
  {
    "content": "A1: Flip curator crossProject default to false + update prompt guidance",
    "status": "completed",
    "priority": "high"
  },
  {
    "content": "A2: Relevance-gate foreign cross-project entries in forSession (helper + fast path + no-context fallback)",
    "status": "completed",
    "priority": "high"
  },
  {
    "content": "A3: Add DB migration to demote wrongly-marked cross_project rows + bump schema version test",
    "status": "completed",
    "priority": "high"
  },
  {
    "content": "B: Add mode:subagent to lore-* workers + update opencode test",
    "status": "completed",
    "priority": "high"
  },
  {
    "content": "C1: Tighten inferProjectPath patterns",
    "status": "completed",
    "priority": "medium"
  },
  {
    "content": "C2: Guard self-heal merge against weak-inference cross-real-path merges",
    "status": "completed",
    "priority": "medium"
  },
  {
    "content": "Add tests (ltm gating, migration, curator default, config inference, ...

total 8
drwxr-xr-x 1 byk byk  38 May 22 09:57 .
drwxr-xr-x 1 byk byk 384 Jun  9 12:07 ..
-rw-r--r-- 1 byk byk  13 May 22 09:57 asset.txt
-rw-r--r-- 1 byk byk 102 May 22 09:57 sample.cjs
--- test files ---
test/asset.txt
test/sample.cjs
--- sample.cjs ---
const sea = require('node:sea');
console.log(new TextDecoder().decode(sea.getRawAsset('asset.txt')));
--- any *.test.ts ---
--- package.json scripts ---
{
  "prebuild": "tsc -p src/tsconfig.json",
  "build": "tsup",
  "prepublishOnly": "npm run build",
  "#postinstall": "npx @stricli/auto-complete@latest install fossilize __fossilize_bash_complete"
}
volta: {"node":"22.14.0"}

=== workflow runs for new SHA dc99086 ===
completed	action_required	Fix path stacking in sidebar and detail tabs (React Router v7 splat routes)	Build & Test	main	pull_request	27307737444	0s	2026-06-10T21:32:20Z
completed	action_required	Fix path stacking in sidebar and detail tabs (React Router v7 splat routes)		main	pull_request	27307737231	0s	2026-06-10T21:32:20Z
completed	action_required	Fix path stacking in sidebar and detail tabs (React Router v7 splat routes)		main	pull_request	27307737467	0s	2026-06-10T21:32:20Z
completed	action_required	Fix path stacking in sidebar and detail tabs (React Router v7 splat routes)		main	pull_request	27307737502	0s	2026-06-10T21:32:20Z
=== all check runs (api) ===
{"conclusion":"success","name":"Seer Code Review","status":"completed"}
{"conclusion":"success","name":"Cursor Bugbot","status":"completed"}
{"conclusion":null,"name":"semgrep-cloud-platform/scan","status":"in_progress"}

cfd4fc5 fix(entities,ui): restore knowledge/entity views + harden self-merge + re-derivation
11c9f79 fix: distillation queue coalescing + log spam dedup + compaction anomaly handling (#676)
fb7e621 Merge branch 'release/0.26.0'
49a0f65 ci(publish): use sudo for global npm upgrade (EACCES on /usr/local) (#679)
5ce2248 ci(publish): restore npm upgrade for OIDC trusted publishing (#678)

 .lore.md                                | 84 ++++++++-------------------------
 packages/gateway/src/cli/lib/bspatch.ts | 41 ++++++++--------
 2 files changed, 40 insertions(+), 85 deletions(-)

(no output)

{"baseRefName":"main","commits":[{"authoredDate":"2026-06-10T20:48:54Z","authors":[{"email":"ben@byk.im","id":"MDQ6VXNlcjEyNjc4MA==","login":"BYK","name":"Burak Yigit Kaya"}],"committedDate":"2026-06-10T21:31:51Z","messageBody":"…+ re-derivation\n\nTwo recent features made data appear lost from the dashboard even though\nnothing was deleted:\n\n1. /ui/knowledge only listed cross-project/global entries, so project-scoped\n   knowledge (the majority) rendered as empty. Rewrite pageUserKnowledge() to\n   show ALL knowledge grouped into 'Cross-project & Global' and 'Project\n   Knowledge' sections via a shared renderKnowledgeTable() helper (project\n   table soft-capped for large DBs).\n\n2. People entities vanished because mergeSelfPersonDuplicates() matched on ANY\n   alias type (incl. url/domain), absorbing unrelated colleagues into the self\n   entity. ...

.lore.md
packages/gateway/src/cli/lib/bspatch.ts

cfd4fc5 fix(entities,ui): restore knowledge/entity views + harden self-merge + re-derivation
11c9f79 fix: distillation queue coalescing + log spam dedup + compaction anomaly handling (#676)
fb7e621 Merge branch 'release/0.26.0'
49a0f65 ci(publish): use sudo for global npm upgrade (EACCES on /usr/local) (#679)
5ce2248 ci(publish): restore npm upgrade for OIDC trusted publishing (#678)
bb924a3 release: 0.26.0
9650983 fix(gateway): error the compaction keepalive stream on summary failure (#675)
fb5c1d6 docs: update documentation for bun to node+pnpm+vitest migration (#674)
3186e2d feat(gateway): offline compaction from distillations + SSE keepalive (#672)
5fe7bdc fix(gateway): persist session project binding so restarts don't split sessions (#673)
c4250b0 fix(gateway): make the LLM adapter the single owner of worker-failure attribution (#671)
6028b40 fix(gateway): circuit-break runaway worker failures + stable Sentry grouping (#669)
4bfabb4 fix(gateway): unify worker retry policy to ride ...

...output truncated...

Full output saved to: /home/byk/.local/share/opencode/tool-output/tool_eb379edda001ZG7cvTMliQ0BB9

+ * aliases (`url`, `domain`) routinely co-occur on unrelated colleagues — e.g.
+ * everyone on a team shares `github.com/org` or `sentry.io` — so matching on
+ * them would over-merge real people into the self entity and delete them.
+ */
+const IDENTITY_ALIAS_TYPES: ReadonlySet<AliasType> = new Set([
+  "name",
+  "email",
+  "github",
+  "slack",
+  "phone",
+  "nickname",
+]);
+
 /** Columns to SELECT for Entity — avoids pulling unnecessary data. */
 const ENTITY_COLS =
   "id, project_id, entity_type, canonical_name, metadata, cross_project, created_at, updated_at";
@@ -473,24 +489,31 @@ function missingSelfEntity(): never {
 }
 
 /**
- * Find "person" entities whose canonical name or alias values overlap with the
- * self entity's aliases, and merge them into the self entity.
- * Exported for testing. ...

<path>/home/byk/Code/opencode-lore/packages/core/src/entities.ts</path>
<type>file</type>
<content>
120: 
121: /** Entity types that default to cross-project (user-level). */
122: const CROSS_PROJECT_TYPES: ReadonlySet<EntityType> = new Set([
123:   "self",
124:   "person",
125:   "org",
126:   "service",
127:   "tool",
128: ]);
129: 
130: /**
131:  * Alias types that uniquely identify a *person*. Used to gate self/person
132:  * merging: only these may trigger an absorb-into-self. Shared, non-identity
133:  * aliases (`url`, `domain`) routinely co-occur on unrelated colleagues — e.g.
134:  * everyone on a team shares `github.com/org` or `sentry.io` — so matching on
135:  * them would over-merge real people into the self entity and delete them. ...

<path>/home/byk/Code/opencode-lore/packages/core/src/entities.ts</path>
<type>file</type>
<content>
485: function missingSelfEntity(): never {
486:   throw new Error(
487:     "self entity invariant violation: getSelfEntity() returned null",
488:   );
489: }
490: 
491: /**
492:  * Find "person" entities that are genuinely the *same individual* as the self
493:  * entity and merge them in. Exported for testing.
494:  *
495:  * Matching is restricted to IDENTITY_ALIAS_TYPES (name/email/github/slack/
496:  * phone/nickname) plus the canonical name. Non-identity aliases (`url`,
497:  * `domain`) are deliberately ignored: they are shared across whole teams, so
498:  * matching on them would absorb (and delete) unrelated colleagues. The self
499:  * entity's match set is likewise built from identity aliases only.
500:  *
501:  * NOTE: The match set is captured once before the loop and is NOT refreshed
502:  * after each merge. ...

<path>/home/byk/Code/opencode-lore/packages/core/src/entities.ts</path>
<type>file</type>
<content>
1750: // kind='entity'; the knowledge calibration path (ltm.ts) implicitly operates on
1751: // kind='knowledge' (the column default).
1752: // ---------------------------------------------------------------------------
1753: 
1754: export type EntityDedupFeedbackSource =
1755:   | "auto_dedup"
1756:   | "cli_yes"
1757:   | "cli_interactive"
1758:   | "dashboard"
1759:   // Audit-only: a person entity absorbed into the self entity. Excluded from
1760:   // threshold calibration (it is tautological — always similarity 1.0).
1761:   | "self_merge";
1762: 
1763: const MIN_ENTITY_CALIBRATION_SAMPLES = 20;
1764: /** Only record auto-signals for pairs with similarity >= this floor. */
1765: const ENTITY_AUTO_SIGNAL_MIN_SIMILARITY = 0.8;
1766: /**
1767:  * Return a Set of "nameA\x1fnameB" keys for entity pairs that have been
1768:  * explicitly dismissed (accepted=0) via the dashboard. ...

<path>/home/byk/Code/opencode-lore/packages/core/src/entities.ts</path>
<type>file</type>
<content>
1870:       projectId,
1871:       entryATitle: s.entryATitle,
1872:       entryBTitle: s.entryBTitle,
1873:       similarity: s.similarity,
1874:       accepted: false,
1875:       source: "auto_dedup",
1876:     });
1877:   }
1878: }
1879: 
1880: /** Get all entity feedback for a project (for calibration). */
1881: export function getEntityDedupFeedback(
1882:   projectId: string | null,
1883: ): Array<{ similarity: number; accepted: boolean; source: string }> {
1884:   const rows = (
1885:     projectId !== null
1886:       ? db()
1887:           .query(
1888:             "SELECT similarity, accepted, source FROM dedup_feedback WHERE kind = 'entity' AND source != 'self_merge' AND project_id = ? ORDER BY similarity",
1889:           )
1890:           .all(projectId)
1891:       : db()
1892:           .query(
1893:             "SELECT similarity, accepted, source FROM dedup_feedback ...

<path>/home/byk/Code/opencode-lore/packages/core/src/entity-rebuild.ts</path>
<type>file</type>
<content>
1: /**
2:  * Entity re-derivation — rebuild the entity registry from historical
3:  * distillations.
4:  *
5:  * Used to recover people/orgs/services/tools that were lost (e.g. merged away
6:  * by an over-eager self/person merge) without touching the conversation
7:  * history, which is intact. Runs an extraction-only LLM pass (no knowledge
8:  * ops) over a project's distillation observations, recreates the detected
9:  * entities + relations, then folds genuine self-duplicates into the self
10:  * entity and runs the normal embedding dedup sweep.
11:  *
12:  * This is an offline, host-triggered operation (CLI / REST) — it requires a
13:  * worker LLM client built from gateway config, since there is no live session.
14:  */
15: import * as distillation from "./distillation";
16: import * as entities from "./entities";
17: import * as embedding from "./embedding";
18: import { ...

<path>/home/byk/Code/opencode-lore/packages/core/src/prompt.ts</path>
<type>file</type>
<content>
509:    include them in the "relations" field. Only explicit statements — not inferred from context.`;
510: }
511: 
512: /**
513:  * System prompt for the offline entity-extraction pass (entity re-derivation).
514:  *
515:  * Unlike the curator, this extracts ONLY entities and relations — no knowledge
516:  * ops. Used to rebuild the entity registry from historical distillations after
517:  * data loss. Output is parsed by `curator.parseResponse` (it reads `entities`
518:  * and `relations`; `ops` is left empty).
519:  */
520: export const ENTITY_EXTRACT_SYSTEM = `You are an entity-extraction assistant. Your job is to identify recurring real-world entities — people, organizations, services, tools, repositories, and infrastructure — mentioned in summaries of a user's coding sessions. ...

Found 1 matches
/home/byk/Code/opencode-lore/packages/core/src/distillation.ts:
  Line 675: export function loadForProject(

<path>/home/byk/Code/opencode-lore/packages/core/src/distillation.ts</path>
<type>file</type>
<content>
670:  * Used by offline reprocessing (e.g. entity re-derivation) that needs the
671:  * full project history rather than a single session's prefix. `includeArchived`
672:  * defaults to true here because archived gen-0 segments carry the richest
673:  * detail (specific people, tools), which is exactly what recovery passes want.
674:  */
675: export function loadForProject(
676:   projectPath: string,
677:   includeArchived = true,
678: ): Distillation[] {
679:   const pid = ensureProject(projectPath);
680:   const sql = includeArchived
681:     ? "SELECT id, project_id, session_id, observations, source_ids, generation, token_count, created_at, r_compression, c_norm FROM distillations WHERE project_id = ? ...

Found 8 matches
/home/byk/Code/opencode-lore/packages/gateway/src/api.ts:
  Line 25:   isHostedMode,

  Line 288:   if (isHostedMode()) {

  Line 447:  * POST /api/v1/entities/rebuild — re-derive entities from distillation history.

  Line 456: async function handleEntityRebuild(

  Line 460:   if (isHostedMode()) {

  Line 710:     // POST /api/v1/entities/rebuild — re-derive entities from history

  Line 711:     if (pathname === "/api/v1/entities/rebuild") {

  Line 712:       return await handleEntityRebuild(req, config);

<path>/home/byk/Code/opencode-lore/packages/gateway/src/api.ts</path>
<type>file</type>
<content>
446: /**
447:  * POST /api/v1/entities/rebuild — re-derive entities from distillation history.
448:  *
449:  * Body: { git_remote?, path?, all?, dryRun?, model? }. Provide a project
450:  * (git_remote or path) OR `all: true` to process every project with history.
451:  * `dryRun: true` returns the candidate entities without writing.
452:  *
453:  * Blocked in hosted mode — this triggers LLM calls that incur real cost and
454:  * should only run on the operator's own gateway, not from untrusted callers.
455:  */
456: async function handleEntityRebuild(
457:   req: Request,
458:   config: GatewayConfig,
459: ): Promise<Response> {
460:   if (isHostedMode()) {
461:     return errorResponse(
462:       403,
463:       "forbidden",
464:       "Entity rebuild is not available in hosted mode (triggers LLM calls with cost).",
465:     );
466:   }
467:   const body = await parseBody<{
468:     ...

<path>/home/byk/Code/opencode-lore/packages/gateway/src/api.ts</path>
<type>file</type>
<content>
680:     params = matchRoute(pathname, "/api/v1/sessions/:id");
681:     if (params) return handleDeleteSession(url, params.id);
682: 
683:     // DELETE /api/v1/distillations/:id
684:     params = matchRoute(pathname, "/api/v1/distillations/:id");
685:     if (params) return handleDeleteDistillation(params.id);
686: 
687:     // DELETE /api/v1/projects/:id
688:     params = matchRoute(pathname, "/api/v1/projects/:id");
689:     if (params) return handleDeleteProject(params.id);
690:   }
691: 
692:   if (method === "POST") {
693:     // Literal routes first (before parameterized :id routes)
694: 
695:     // POST /api/v1/projects/merge
696:     if (pathname === "/api/v1/projects/merge") {
697:       return handleMergeProjects();
698:     }
699: 
700:     // POST /api/v1/reindex — global, not project-scoped (backfill is DB-wide)
701:     if (pathname === "/api/v1/reindex") {
702:       ...

<path>/home/byk/Code/opencode-lore/packages/gateway/src/ui.ts</path>
<type>file</type>
<content>
2835: 
2836: async function pageEntities(): Promise<string> {
2837:   const all = entities.listAll();
2838: 
2839:   let body = breadcrumb([
2840:     { label: "Dashboard", href: "/ui" },
2841:     { label: "Entities" },
2842:   ]);
2843:   body += `<h1>Entities (${all.length})</h1>`;
2844: 
2845:   // Re-derive entities from distillation history (recovery after data loss).
2846:   // Client-side fetch to the REST endpoint so the long-running LLM work runs in
2847:   // the gateway (which holds upstream + auth). Shown even when the list is empty
2848:   // — that is exactly the case where recovery is most useful. ...

<path>/home/byk/Code/opencode-lore/packages/gateway/src/cli/data.ts</path>
<type>file</type>
<content>
2134:   console.log(`\nConsolidated ${merged} bucket(s).`);
2135: }
2136: 
2137: type RebuildResult = {
2138:   projectPath: string;
2139:   scannedDistillations: number;
2140:   batches: number;
2141:   detected: number;
2142:   personsCreated: number;
2143:   orgsCreated: number;
2144:   otherCreated: number;
2145:   relationsCreated: number;
2146:   mergedIntoSelf: number;
2147:   dedupMerged: number;
2148:   candidates?: Array<{ type: string; name: string }>;
2149: };
2150: 
2151: /**
2152:  * Re-derive entities (people, orgs, services, tools) from a project's
2153:  * distillation history. Delegates to the gateway's REST endpoint because the
2154:  * extraction needs a worker LLM — only the running gateway holds the upstream
2155:  * + auth. Resolves the gateway via LORE_REMOTE_URL, else the local port file. ...

<path>/home/byk/Code/opencode-lore/packages/core/test/entity-rebuild.test.ts</path>
<type>file</type>
<content>
1: import { beforeEach, describe, expect, test } from "vitest";
2: import { db, ensureProject } from "../src/db";
3: import * as entities from "../src/entities";
4: import { rebuildEntitiesFromHistory } from "../src/entity-rebuild";
5: import type { LLMClient } from "../src/types";
6: 
7: const PROJECT = "/test/entity-rebuild/project";
8: 
9: function cleanup() {
10:   const d = db();
11:   d.exec("DELETE FROM entity_relations");
12:   d.exec("DELETE FROM knowledge_entity_refs");
13:   d.exec("DELETE FROM entity_aliases");
14:   d.exec("DELETE FROM entities");
15:   d.exec("DELETE FROM dedup_feedback");
16:   const pid = ensureProject(PROJECT);
17:   d.query("DELETE FROM distillations WHERE project_id = ?").run(pid);
18: }
19: 
20: function insertDistillation(observations: string): void {
21:   const pid = ensureProject(PROJECT);
22:   db()
23:     .query(
24:       `INSERT ...

<path>/home/byk/Code/opencode-lore/packages/core/test/entities.test.ts</path>
<type>file</type>
<content>
1038:       // Re-fetch self with aliases
1039:       // biome-ignore lint/style/noNonNullAssertion: getWithAliases() returns null for missing entities
1040:       const updated = entities.getWithAliases(self.id)!;
1041:       const aliasValues = updated.aliases.map((a) => a.alias_value);
1042:       expect(aliasValues).toContain("alice-gh");
1043:       expect(aliasValues).toContain("alice-slack");
1044:     });
1045: 
1046:     test("does NOT merge a colleague sharing only a non-identity (url/domain) alias", () => {
1047:       // Reproduces the over-merge bug: a colleague who merely shares the
1048:       // company domain/repo URL with the user must NOT be absorbed into self.
1049:       // The literal value "acme.io" is shared across different alias TYPES,
1050:       // which is allowed by the table-wide UNIQUE(alias_type, alias_value).
1051:       const colleague = ...

Found 1 matches
/home/byk/Code/opencode-lore/packages/core/src/curator.ts:
  Line 86: export function parseResponse(text: string): CuratorResponse {

<path>/home/byk/Code/opencode-lore/packages/core/src/curator.ts</path>
<type>file</type>
<content>
1: import { config } from "./config";
2: import {
3:   db,
4:   saveSessionTracking,
5:   loadSessionTracking,
6:   ensureProject,
7: } from "./db";
8: import * as temporal from "./temporal";
9: import * as distillation from "./distillation";
10: import * as ltm from "./ltm";
11: import * as entities from "./entities";
12: import * as embedding from "./embedding";
13: import * as log from "./log";
14: import {
15:   CURATOR_SYSTEM,
16:   curatorUser,
17:   CONSOLIDATION_SYSTEM,
18:   consolidationUser,
19: } from "./prompt";
20: import * as toolTrace from "./tool-trace";
21: import { detectAndFormat } from "./instruction-detect";
22: import { curatorLimiter } from "./session-limiter";
23: import type { LLMClient } from "./types";
24: import type { EntityType, AliasType, RelationType } from "./entities";
25: 
26: /**
27:  * Maximum length (chars) for a single knowledge entry's content. ...

Found 1 matches
/home/byk/Code/opencode-lore/packages/core/src/entities.ts:
  Line 39: export type AliasType =

<path>/home/byk/Code/opencode-lore/packages/core/src/entities.ts</path>
<type>file</type>
<content>
39: export type AliasType =
40:   | "name"
41:   | "email"
42:   | "github"
43:   | "slack"
44:   | "phone"
45:   | "nickname"
46:   | "url"
47:   | "domain";
48: 
49: export type Entity = {
50:   id: string;
51:   project_id: string | null;
52:   entity_type: EntityType;
53:   canonical_name: string;
54:   metadata: string | null;
55:   cross_project: number;
56:   created_at: number;
57:   updated_at: number;
58: };

(Showing lines 39-58 of 2029. Use offset=59 to continue.)
</content>

Found 1 matches
/home/byk/Code/opencode-lore/packages/core/src/entities.ts:
  Line 385: export function ensureSelfEntity(

<path>/home/byk/Code/opencode-lore/packages/core/src/entities.ts</path>
<type>file</type>
<content>
385: export function ensureSelfEntity(
386:   projectPath: string,
387: ): EntityWithAliases | null {
388:   const cfg = config().user;
389:   const git = getGitUser(projectPath);
390: 
391:   const name = cfg?.name || git.name;
392:   if (!name) return getSelfEntity(); // no identity source — return existing or null
393: 
394:   const email = cfg?.email || git.email;
395:   const existing = getSelfEntity();
396: 
397:   if (existing) {
398:     // Update name if changed
399:     const updates: {
400:       canonicalName?: string;
401:       metadata?: Record<string, unknown>;
402:     } = {};
403:     if (existing.canonical_name !== name) {
404:       updates.canonicalName = name;
405:     }
406:     // Merge config metadata into existing
407:     if (cfg?.metadata && Object.keys(cfg.metadata).length > 0) {
408:       const merged = mergeMetadata(
409:         existing.metadata,
410:   ...

Found 1 matches
/home/byk/Code/opencode-lore/packages/core/src/types.ts:
  Line 212: export interface LLMClient {

<path>/home/byk/Code/opencode-lore/packages/core/src/types.ts</path>
<type>file</type>
<content>
212: export interface LLMClient {
213:   /**
214:    * Send a single prompt and return the text response.
215:    *
216:    * @param system  System prompt text
217:    * @param user    User message text
218:    * @param opts    Optional model selection, worker identification, and thinking control
219:    * @returns The assistant's text response, or null on failure
220:    */
221:   prompt(
222:     system: string,
223:     user: string,
224:     opts?: {
225:       /** Override model for this call. */
226:       model?: { providerID: string; modelID: string };
227:       /**
228:        * Opaque worker identifier used by the host to route the request
229:        * (e.g. OpenCode uses this as the session agent name).
230:        */
231:       workerID?: string;
232:       /**
233:        * Disable extended thinking/reasoning for this call. ...

Found 1 matches
/home/byk/Code/opencode-lore/packages/core/src/entities.ts:
  Line 709: export function resolve(mention: string): Entity | null {

<path>/home/byk/Code/opencode-lore/packages/core/src/entities.ts</path>
<type>file</type>
<content>
709: export function resolve(mention: string): Entity | null {
710:   // 1. Exact alias match (case-insensitive)
711:   const aliasMatch = db()
712:     .query(
713:       `SELECT ${ENTITY_COLS_E}
714:        FROM entities e
715:        JOIN entity_aliases a ON a.entity_id = e.id
716:        WHERE a.alias_value = ? COLLATE NOCASE
717:        LIMIT 1`,
718:     )
719:     .get(mention) as Entity | null;
720: 
721:   if (aliasMatch) return aliasMatch;
722: 
723:   // 2. Exact canonical name match (case-insensitive)
724:   const nameMatch = db()
725:     .query(
726:       `SELECT ${ENTITY_COLS} FROM entities
727:        WHERE canonical_name = ? COLLATE NOCASE
728:        LIMIT 1`,
729:     )
730:     .get(mention) as Entity | null;
731: 
732:   if (nameMatch) return nameMatch;
733: 
734:   // 3. ...

Found 2 matches
/home/byk/Code/opencode-lore/packages/core/src/ltm.ts:
  Line 840: export function all(): KnowledgeEntry[] {

  Line 849: export function crossProject(): KnowledgeEntry[] {

<path>/home/byk/Code/opencode-lore/packages/core/src/ltm.ts</path>
<type>file</type>
<content>
840: export function all(): KnowledgeEntry[] {
841:   return db()
842:     .query(
843:       `SELECT ${KNOWLEDGE_COLS} FROM knowledge WHERE confidence > 0.2 ORDER BY confidence DESC, updated_at DESC`,
844:     )
845:     .all() as KnowledgeEntry[];
846: }
847: 
848: /** Return all cross-project and global (user-level) knowledge entries. */
849: export function crossProject(): KnowledgeEntry[] {
850:   return db()
851:     .query(
852:       `SELECT ${KNOWLEDGE_COLS} FROM knowledge
853:        WHERE (project_id IS NULL OR cross_project = 1) AND confidence > 0.2
854:        ORDER BY confidence DESC, updated_at DESC`,
855:     )
856:     .all() as KnowledgeEntry[];
857: }
858: 
859: /**
860:  * Re-score confidence on preference entries using directive-detection patterns.
861:  * Only touches entries with confidence = 1.0 (legacy/unscored). ...

No files found

Found 19 matches
/home/byk/Code/opencode-lore/packages/gateway/src/cli/data.ts:
  Line 16:   getRemoteUrl,

  Line 19:   remotePost,

  Line 86:   const remote = getRemoteUrl();

  Line 235:   const remote = getRemoteUrl();

  Line 363:   const remote = getRemoteUrl();

  Line 474:   const remote = getRemoteUrl();

  Line 605:   const remote = getRemoteUrl();

  Line 753:   const remote = getRemoteUrl();

  Line 892:   const remote = getRemoteUrl();

  Line 1226:   const remote = getRemoteUrl();

  Line 1245:   const remote = getRemoteUrl();

  Line 1643:   const result = await remotePost<Record<string, number>>(

  Line 1787:   const result = await remotePost<{

  Line 1859:       const result = await remotePost(remote, `/api/v1/projects/${p.id}/dedup`);

  Line 1873:     const result = await remotePost(

  Line 1894:   const result = await remotePost<{

  Line 2026:   const remote = getRemoteUrl();

  Line 2167:   let baseUrl = getRemoteUrl();

  Line 2209:     resp = await ...

Found 1 matches
/home/byk/Code/opencode-lore/packages/gateway/src/cli/remote.ts:
  Line 104: export async function remotePost<T = unknown>(

<path>/home/byk/Code/opencode-lore/packages/gateway/src/cli/remote.ts</path>
<type>file</type>
<content>
104: export async function remotePost<T = unknown>(
105:   baseUrl: string,
106:   path: string,
107:   body?: unknown,
108:   opts?: { compress?: boolean },
109: ): Promise<T> {
110:   const headers: Record<string, string> = {
111:     "Content-Type": "application/json",
112:   };
113: 
114:   let payload: BodyInit | undefined;
115:   if (body !== undefined) {
116:     const json = JSON.stringify(body);
117:     if (opts?.compress) {
118:       headers["Content-Encoding"] = "zstd";
119:       payload = new Uint8Array(zstdCompressSync(Buffer.from(json)));
120:     } else {
121:       payload = json;
122:     }
123:   }
124: 
125:   const res = await fetch(`${baseUrl}${path}`, {
126:     method: "POST",
127:     headers,
128:     body: payload,
129:   });
130:   return handleResponse<T>(res);
131: }
132: 
133: /** DELETE request to remote gateway API. ...

Found 1 matches
/home/byk/Code/opencode-lore/packages/gateway/src/api.ts:
  Line 79: async function parseBody<T = unknown>(req: Request): Promise<T> {

Found 11 matches
/home/byk/Code/opencode-lore/packages/gateway/src/api.ts:
  Line 23:   resolveProjectByRemoteOrPath,

  Line 24:   projectPath as getProjectPathById,

  Line 105:     const path = getProjectPathById(routeId);

  Line 114:   const id = resolveProjectByRemoteOrPath(gitRemote, pathParam);

  Line 117:   const path = getProjectPathById(id);

  Line 408:   const projectId = resolveProjectByRemoteOrPath(body.git_remote, body.path);

  Line 409:   const projectPath = projectId ? getProjectPathById(projectId) : body.path;

  Line 501:     const projectId = resolveProjectByRemoteOrPath(body.git_remote, body.path);

  Line 502:     const projectPath = projectId ? getProjectPathById(projectId) : body.path;

  Line 560:   const projectId = resolveProjectByRemoteOrPath(body.git_remote, body.path);

  Line 561:   const projectPath = projectId ? getProjectPathById(projectId) : body.path;

<path>/home/byk/Code/opencode-lore/packages/gateway/src/ui.ts</path>
<type>file</type>
<content>
2856:   <script>
2857:   function loreRebuildEntities(dry){
2858:     if(!dry && !confirm('Re-derive entities across ALL projects from history? This runs LLM extraction and may take a while and incur cost.')) return;
2859:     var s=document.getElementById('lore-rebuild-status');
2860:     s.textContent=' Working\\u2026 (this can take a while)';
2861:     fetch('/api/v1/entities/rebuild',{method:'POST',headers:{'Content-Type':'application/json'},body:JSON.stringify({all:true,dryRun:dry})})
2862:       .then(function(r){return r.json();})
2863:       .then(function(d){
2864:         if(d.error){s.textContent=' Error: '+((d.error&&d.error.message)||'failed');return;}
2865:         var res=d.results||[];
2866:         var people=0,total=0,detected=0;
2867:         ...

Found 1 matches
/home/byk/Code/opencode-lore/packages/gateway/src/ui.ts:
  Line 61: function esc(str: string): string {

<path>/home/byk/Code/opencode-lore/packages/gateway/src/ui.ts</path>
<type>file</type>
<content>
61: function esc(str: string): string {
62:   return str
63:     .replace(/&/g, "&amp;")
64:     .replace(/</g, "&lt;")
65:     .replace(/>/g, "&gt;")
66:     .replace(/"/g, "&quot;")
67:     .replace(/'/g, "&#39;");
68: }
69: 
70: function timeAgo(ts: number): string {
71:   const diff = Date.now() - ts;
72:   const mins = Math.floor(diff / 60000);
73:   if (mins < 1) return "just now";
74:   if (mins < 60) return `${mins}m ago`;
75:   const hours = Math.floor(mins / 60);

(Showing lines 61-75 of 3459. Use offset=76 to continue.)
</content>

Found 1 matches
/home/byk/Code/opencode-lore/packages/gateway/src/cli/data.ts:
  Line 56: async function confirm(message: string): Promise<boolean> {

No files found

Found 28 matches
/home/byk/Code/opencode-lore/packages/gateway/src/cli/import.ts:
  Line 72:   const dryRun = flags["dry-run"] === true || flags.dryRun === true;


/home/byk/Code/opencode-lore/packages/gateway/src/cli/data.ts:
  Line 971:   // Interactive mode: dry-run first, then prompt per cluster

  Line 1070:  * Interactive dedup: dry-run first, then prompt the user per cluster

  Line 1996:   lore data consolidate                    # dry-run: show "(unattributed)" buckets & matches

  Line 2001:   lore data reground-entities --dry-run    # preview entities re-derived from history (current project)

  Line 2004:   lore data dedup                          # dry-run: show duplicate clusters

  Line 2038:   // Destructive op → default to a dry run. Apply only with --yes. `--dry-run`

  Line 2040:   const dryRun = !!flags["dry-run"] || !skipConfirm;

  Line 2111:   // Dry run (default, or explicit --dry-run): preview only, never mutate.

  Line 2162:   const dryRun = ...

<path>/home/byk/Code/opencode-lore/packages/gateway/src/cli/main.ts</path>
<type>file</type>
<content>
164:   let values: ReturnType<typeof parseArgs>["values"];
165:   let positionals: string[];
166:   let tokens: ParseToken[];
167:   const argv = process.argv.slice(2);
168: 
169:   try {
170:     const parsed = parseArgs({
171:       args: argv,
172:       options: OPTIONS,
173:       allowPositionals: true,
174:       strict: false,
175:       tokens: true,
176:     });
177:     values = parsed.values;
178:     positionals = parsed.positionals;
179:     tokens = parsed.tokens as ParseToken[];
180:   } catch (e) {
181:     console.error(`Error: ${e instanceof Error ? e.message : e}`);
182:     printHelp();
183:     process.exit(1);
184:   }
185: 
186:   // --version / -v (only when no subcommand is given)
187:   if (values.version && positionals.length === 0) {
188:     printVersion();
189:     return;
190:   }
191: 
192:   // --print-vendor-info (hidden; used by CI to verify the ...

Found 2 matches
/home/byk/Code/opencode-lore/packages/gateway/src/cli/main.ts:
  Line 40: const KNOWN_OPTIONS = new Set<string>();

  Line 90: const OPTIONS = {

<path>/home/byk/Code/opencode-lore/packages/gateway/src/cli/main.ts</path>
<type>file</type>
<content>
90: const OPTIONS = {
91:   port: { type: "string" as const, short: "p" },
92:   host: { type: "string" as const, short: "H", multiple: true },
93:   debug: { type: "boolean" as const, short: "d" },
94:   remote: { type: "string" as const, short: "r" },
95:   version: { type: "boolean" as const, short: "v" },
96:   help: { type: "boolean" as const, short: "h" },
97:   yes: { type: "boolean" as const, short: "y" },
98:   interactive: { type: "boolean" as const, short: "i" },
99:   noPlugin: { type: "boolean" as const },
100:   // `lore logs` flags
101:   follow: { type: "boolean" as const, short: "f" },
102:   n: { type: "string" as const },
103:   lines: { type: "string" as const },
104:   path: { type: "boolean" as const },
105:   // `lore start --local` — disable hosted mode (keep FS ops active)
106:   local: { type: "boolean" as const, short: "l" },
107:   // Hidden diagnostic: ...

<path>/home/byk/Code/opencode-lore/packages/gateway/src/cli/main.ts</path>
<type>file</type>
<content>
298:         await commandLogs(rest, values as Record<string, unknown>);
299:         break;
300:       }
301: 
302:       case "import": {
303:         const { commandImport } = await import("./import");
304:         await commandImport(rest, values as Record<string, unknown>);
305:         break;
306:       }
307: 
308:       case "entity": {
309:         const { commandEntity } = await import("./entity");
310:         await commandEntity(rest, values as Record<string, unknown>);
311:         break;
312:       }
313: 
314:       case "upgrade": {
315:         const { commandUpgrade } = await import("./upgrade");
316:         // Pass raw args so upgrade's own parseArgs handles --version, --channel etc.
317:         // Start search at index 2 to skip the binary/script path entries.
318:         const rawUpgradeArgs = process.argv.slice(
319:           process.argv.indexOf("upgrade", ...

values: {"dry-run":true,"project":true,"all":true,"json":true,"yes":true}
positionals: ["data","reground-entities","."]

Found 10 matches
/home/byk/Code/opencode-lore/packages/gateway/src/cli/data.ts:
  Line 93:   const projectPath = resolve((flags.project as string) ?? process.cwd());

  Line 242:   const projectPath = resolve((flags.project as string) ?? process.cwd());

  Line 396:   const projectPath = resolve((flags.project as string) ?? process.cwd());

  Line 481:   const projectPath = resolve((flags.project as string) ?? process.cwd());

  Line 905:     typeof flags.project === "string" ? resolve(flags.project) : null;

  Line 1294:   const projectPath = resolve((flags.project as string) ?? process.cwd());

  Line 1493:   const projectPath = resolve((flags.project as string) ?? process.cwd());

  Line 1662:   const projectPath = resolve((flags.project as string) ?? process.cwd());

  Line 1826:     typeof flags.project === "string" ? resolve(flags.project) : null;

  Line 2187:     const projectPath = resolve((flags.project as string) ?? process.cwd());

values: {"project":true}
positionals: ["data","show","/foo/bar"]

<path>/home/byk/Code/opencode-lore/packages/gateway/src/cli/main.ts</path>
<type>file</type>
<content>
270:         const { commandRun } = await import("./run");
271:         const agentArgs = extractAgentArgs(argv, tokens);
272:         // Pass only the agent name (if any) as cmdArgs; extra flags go via agentArgs.
273:         const agentName = rest.length > 0 ? [rest[0]] : [];
274:         await commandRun(startOpts, agentName, agentArgs);
275:         break;
276:       }
277: 
278:       case "setup": {
279:         const { commandSetup } = await import("./setup");
280:         await commandSetup(rest, values as Record<string, unknown>);
281:         break;
282:       }
283: 
284:       case "data": {
285:         const { commandData } = await import("./data");
286:         await commandData(rest, values as Record<string, unknown>);
287:         break;
288:       }
289: 
290:       case "recall": {
291:         const { commandRecall } = await import("./recall-cmd");
292:         ...

Found 1 matches
/home/byk/Code/opencode-lore/package.json:
  Line 12:   "volta": {

<path>/home/byk/Code/opencode-lore/package.json</path>
<type>file</type>
<content>
10:   },
11:   "packageManager": "pnpm@10.28.0",
12:   "volta": {
13:     "node": "24.16.0",
14:     "pnpm": "10.28.0"
15:   },
16:   "pnpm": {
17:     "onlyBuiltDependencies": [

(Showing lines 10-17 of 65. Use offset=18 to continue.)
</content>

Found 1 matches
/home/byk/Code/opencode-lore/packages/core/src/distillation.ts:
  Line 611: export type Distillation = {

<path>/home/byk/Code/opencode-lore/packages/core/src/distillation.ts</path>
<type>file</type>
<content>
611: export type Distillation = {
612:   id: string;
613:   project_id: string;
614:   session_id: string;
615:   observations: string;
616:   source_ids: string[];
617:   generation: number;
618:   token_count: number;
619:   created_at: number;
620:   /** k/√N compression ratio. NULL for pre-v12 rows or meta-distillations. */
621:   r_compression: number | null;
622:   /** Temporal clustering [0,1]. NULL for pre-v12 rows or meta-distillations. */
623:   c_norm: number | null;
624: };
625: 
626: /**
627:  * Load distillations for a session, oldest first.
628:  *
629:  * By default (`includeArchived = false`) skips rows that have been archived
630:  * by `archiveDistillations` — typically gen-0 segments that were already
631:  * consolidated into a gen>0 meta. This honors the docstring contract that
632:  * archived rows are "excluded from the in-context prefix."
633:  *
634:  * ...

<path>/home/byk/Code/opencode-lore/packages/core/src/distillation.ts</path>
<type>file</type>
<content>
675: export function loadForProject(
676:   projectPath: string,
677:   includeArchived = true,
678: ): Distillation[] {
679:   const pid = ensureProject(projectPath);
680:   const sql = includeArchived
681:     ? "SELECT id, project_id, session_id, observations, source_ids, generation, token_count, created_at, r_compression, c_norm FROM distillations WHERE project_id = ? ORDER BY created_at ASC"
682:     : "SELECT id, project_id, session_id, observations, source_ids, generation, token_count, created_at, r_compression, c_norm FROM distillations WHERE project_id = ? AND archived = 0 ORDER BY created_at ASC";
683:   const rows = db().query(sql).all(pid) as Array<{
684:     id: string;
685:     project_id: string;
686:     session_id: string;
687:     observations: string;
688:     source_ids: string;
689:     generation: number;
690:     token_count: number;
691:     created_at: ...

Found 2 matches
/home/byk/Code/opencode-lore/packages/core/src/entities.ts:
  Line 856: export function forProject(

  Line 884: export function listAll(): EntityWithAliases[] {

<path>/home/byk/Code/opencode-lore/packages/gateway/src/api.ts</path>
<type>file</type>
<content>
615:           "not_found",
616:           `Project not found: ${params.id}`,
617:         );
618:       return handleListKnowledge(url, project.path);
619:     }
620: 
621:     // GET /api/v1/projects/:id/sessions
622:     params = matchRoute(pathname, "/api/v1/projects/:id/sessions");
623:     if (params) {
624:       const project = resolveProject(url, params.id);
625:       if (!project)
626:         return errorResponse(
627:           404,
628:           "not_found",
629:           `Project not found: ${params.id}`,
630:         );
631:       return handleListSessions(url, project.path);
632:     }
633: 
634:     // GET /api/v1/projects/:id/distillations
635:     params = matchRoute(pathname, "/api/v1/projects/:id/distillations");
636:     if (params) {
637:       const project = resolveProject(url, params.id);
638:       if (!project)
639:         return errorResponse(
640:         ...

<path>/home/byk/Code/opencode-lore/packages/gateway/src/api.ts</path>
<type>file</type>
<content>
735:     // POST /api/v1/projects/:id/dedup
736:     params = matchRoute(pathname, "/api/v1/projects/:id/dedup");
737:     if (params) {
738:       const project = resolveProject(url, params.id);
739:       if (!project)
740:         return errorResponse(
741:           404,
742:           "not_found",
743:           `Project not found: ${params.id}`,
744:         );
745:       return await handleDedup(project.path);
746:     }
747:   }
748: 
749:   return errorResponse(
750:     404,
751:     "not_found",
752:     `No API route for ${method} ${pathname}`,
753:   );
754: }

(End of file - total 754 lines)
</content>

values: {"dry-run":true}
positionals: ["data","reground-entities"]

values: {"project":true}
positionals: ["data","reground-entities","."]
project type: boolean

Found 1 matches
/home/byk/Code/opencode-lore/packages/gateway/src/ui.ts:
  Line 2836: async function pageEntities(): Promise<string> {

No files found

Found 2 matches
/home/byk/Code/opencode-lore/packages/gateway/src/api.ts:
  Line 158:   return jsonResponse(data.listProjects());

  Line 497:       .listProjects()

<path>/home/byk/Code/opencode-lore/packages/gateway/src/api.ts</path>
<type>file</type>
<content>
1: /**
2:  * REST API for remote data management, recall, and import.
3:  *
4:  * All endpoints live under `/api/v1/`. This module is lazy-imported from
5:  * `server.ts` when the request path starts with `/api/` — keeping the
6:  * hot LLM-proxy path free of the extra imports.
7:  *
8:  * Project resolution: endpoints that need a project accept either:
9:  *   - `:id` URL param (project UUID)
10:  *   - `?git_remote=...` query param (preferred for remote clients)
11:  *   - `?path=...` query param (fallback)
12:  */
13: 
14: import {
15:   data,
16:   ltm,
17:   temporal,
18:   embedding,
19:   conversationImport,
20:   entityRebuild,
21:   runRecall,
22:   config as loreConfig,
23:   resolveProjectByRemoteOrPath,
24:   projectPath as getProjectPathById,
25:   isHostedMode,
26:   type RecallScope,
27:   type LLMClient,
28: } from "@loreai/core";
29: import type { GatewayConfig } from ...

Found 4 matches
/home/byk/Code/opencode-lore/packages/gateway/src/api.ts:
  Line 137: function getAPILLMClient(config: GatewayConfig): LLMClient {

  Line 362:     llm = getAPILLMClient(config);

  Line 427:     llm = getAPILLMClient(config);

  Line 484:     llm = getAPILLMClient(config);

Found 6 matches
/home/byk/Code/opencode-lore/packages/core/src/data.ts:
  Line 41:   distillation_count: number;

  Line 51:   distillation_count: number;

  Line 84:   distillation_count: number;

  Line 131:         COALESCE(d.cnt, 0) AS distillation_count

  Line 173:         COALESCE(d.cnt, 0) as distillation_count

  Line 405:         (SELECT COUNT(*) FROM distillations) as distillation_count`,

Found 1 matches
/home/byk/Code/opencode-lore/packages/core/src/hosted.ts:
  Line 35: export function isHostedMode(): boolean {

Found 1 matches
/home/byk/Code/opencode-lore/packages/core/src/db.ts:
  Line 1572: export function resolveProjectByRemoteOrPath(

<path>/home/byk/Code/opencode-lore/packages/core/src/db.ts</path>
<type>file</type>
<content>
1572: export function resolveProjectByRemoteOrPath(
1573:   gitRemote?: string,
1574:   path?: string,
1575: ): string | null {
1576:   if (gitRemote) {
1577:     const row = db()
1578:       .query("SELECT id FROM projects WHERE git_remote = ? LIMIT 1")
1579:       .get(gitRemote) as { id: string } | null;
1580:     if (row) return row.id;
1581:   }
1582:   if (path) {
1583:     return projectId(path) ?? null;
1584:   }
1585:   return null;
1586: }
1587: 
1588: /**
1589:  * Look up the path for a project by its internal ID.
1590:  * Used by the REST API to resolve project UUID → path for core functions
1591:  * that require a path argument.
1592:  */
1593: export function projectPath(id: string): string | null {
1594:   const row = db().query("SELECT path FROM projects WHERE id = ?").get(id) as {
1595:     path: string;
1596:   } | null;
1597:   return row?.path ?? ...

> lore-monorepo@ pretest /home/byk/Code/opencode-lore
> pnpm --filter @loreai/gateway run bundle


> @loreai/gateway@0.26.0 bundle /home/byk/Code/opencode-lore/packages/gateway
> tsx script/bundle.ts


  dist/index.cjs      2.1mb ⚠️
  dist/index.cjs.map  8.8mb

⚡ Done in 650ms

  dist/index.bun.js  1.3mb ⚠️

⚡ Done in 408ms

  dist/embedding-worker.cjs  490.3kb

⚡ Done in 249ms

  dist/embedding-worker.js  489.6kb

⚡ Done in 209ms
✓ Debug ID injected: 6a462a53-c375-4fc1-aae4-a8bc2328b0ea
  No SENTRY_AUTH_TOKEN — skipping sourcemap upload

✓ @loreai/gateway npm bundle complete (v0.26.0)
  dist/index.cjs            — CJS bundle (Node.js, node:sqlite)
  dist/index.bun.js         — ESM bundle (Bun, bun:sqlite)
  dist/embedding-worker.cjs — embedding worker CJS (Node.js)
  dist/embedding-worker.js  — embedding worker ESM (Bun)
  dist/bin.cjs              — CLI wrapper
  dist/index.d.cts          — type declarations

> lore-monorepo@ test /home/byk/Code/opencode-lore
> vitest run -- ...

Found 1 matches
/home/byk/Code/opencode-lore/packages/core/src/curator.ts:
  Line 195: function filterRelations(arr: unknown[]): DetectedRelation[] {

<path>/home/byk/Code/opencode-lore/packages/core/src/curator.ts</path>
<type>file</type>
<content>
195: function filterRelations(arr: unknown[]): DetectedRelation[] {
196:   return arr
197:     .filter((r: unknown): r is DetectedRelation => {
198:       if (typeof r !== "object" || r === null) return false;
199:       const obj = r as Record<string, unknown>;
200:       return (
201:         typeof obj.entity_a === "string" &&
202:         obj.entity_a.length > 0 &&
203:         typeof obj.entity_b === "string" &&
204:         obj.entity_b.length > 0 &&
205:         typeof obj.relation === "string" &&
206:         entities.RELATION_TYPES.includes(obj.relation as RelationType)
207:       );
208:     })
209:     .map((obj) => {
210:       // Validate relation metadata
211:       let validMetadata: Record<string, unknown> | undefined;
212:       if (
213:         typeof obj.metadata === "object" &&
214:         obj.metadata !== null &&
215:         !Array.isArray(obj.metadata)
216:       ...

Found 6 matches
/home/byk/Code/opencode-lore/packages/core/src/entities.ts:
  Line 82: export type RelationType =

  Line 92: export const RELATION_TYPES: readonly RelationType[] = [

  Line 107:   relation: RelationType;

  Line 1051:   relation: RelationType,

  Line 1058:   if (!RELATION_TYPES.includes(relation)) {

  Line 1130:   relation?: RelationType,

<path>/home/byk/Code/opencode-lore/packages/core/src/entities.ts</path>
<type>file</type>
<content>
82: export type RelationType =
83:   | "friend"
84:   | "colleague"
85:   | "manager"
86:   | "report"
87:   | "collaborator"
88:   | "client"
89:   | "mentor"
90:   | "partner";
91: 
92: export const RELATION_TYPES: readonly RelationType[] = [
93:   "friend",
94:   "colleague",
95:   "manager",
96:   "report",
97:   "collaborator",
98:   "client",
99:   "mentor",
100:   "partner",
101: ] as const;
102: 
103: export type EntityRelation = {
104:   id: string;
105:   entity_a: string;
106:   entity_b: string;

(Showing lines 82-106 of 2029. Use offset=107 to continue.)
</content>

<path>/home/byk/Code/opencode-lore/packages/core/src/entities.ts</path>
<type>file</type>
<content>
1051:   relation: RelationType,
1052:   opts?: { metadata?: Record<string, unknown>; source?: string },
1053: ): string | null {
1054:   if (entityA === entityB) {
1055:     log.info(`skipping self-referential relation: ${entityA} (${relation})`);
1056:     return null;
1057:   }
1058:   if (!RELATION_TYPES.includes(relation)) {
1059:     throw new Error(`invalid relation type: ${relation}`);
1060:   }
1061:   const id = uuidv7();
1062:   const now = Date.now();
1063:   try {
1064:     db()
1065:       .query(
1066:         `INSERT INTO entity_relations (id, entity_a, entity_b, relation, metadata, source, created_at, updated_at)
1067:          VALUES (?, ?, ?, ?, ?, ?, ?, ?)`,
1068:       )
1069:       .run(
1070:         id,
1071:         entityA,
1072:         entityB,
1073:         relation,
1074:         opts?.metadata ? JSON.stringify(opts.metadata) : null,
1075:         ...